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Arjun Sarkar

Arjun Sarkar

Researcher

Leibniz Institute for Natural Product Research and Infection Biology Hans Knöll Institute, Germany

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Building a Transformer with PyTorch

Quantitative magician, conjuring valuable knowledge from data spells.

My Work

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Building a Transformer with PyTorch

My Work Experience

Where I've interned and worked during my career.

Leibniz Institute for Natural Product Research and Infection Biology -

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Hans Knöll Institute | Jun 2021 - Present

Doctoral Researcher

Doctoral Student at the Leibniz Institute for Natural Product Research and Infection Biology- HKI, Germany, working on using Deep Learning on Biomedical Images (focusing on microscopic images) in the Applied Systems Biology department.
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Cognex Corporation | May 2020 - Apr 2021

Intern/Master Thesis - Deep Learning/Medical Imaging/Biomedical Engineering

Master Thesis - Benchmarking of Cognex VisionPro Deep Learning Software against open-source Deep Learning models on 2 public datasets: Diabetic Retinopathy Detection and Intracranial Hemorrhage Detection. (SOTA CNN algorithms and Ensemble Learning) 1) Benchmarking COGNEX Deep Learning Software with public image datasets in the medical imaging and microscopic field (COVID-19 Xray and CT images). 2) Benchmarking COGNEX Deep Learning software against open-source and self-designed deep learning frameworks using TensorFlow 2.0 (Python). 3) Deploying Tensorflow-Lite models in Embedded systems - Edge Learning (Raspberry Pi). 4) Working with COGNEX Deep Learning software plugins using C#. 5) Engaging with Digital pathology and Radiology departments in University hospitals to enable scientific/research publications on using COGNEX Deep Learning software on their image datasets. 6) Engaging in project DRACULA: Image formation and COGNEX Vidi Suite HIL inspection of real (3rd party) blood samples.

KARL STORZ India | Dec 2017 - Jun 2018

Product Specialist

Demonstration of KARL STORZ Laparoscopic Imaging systems- Documentation (Eastern India) 1) Installation and Demonstration of 3D, HD, and SD Laparoscopic and Endoscopy Imaging Solutions. 2) Training doctors and hospital staff on KARL STORZ imaging solutions. 3) Arranging and attending conferences and seminars. 4) Coordinating with third party companies of KARL STORZ and planning marketing projects.

Healthware Private Limited | Mar 2015 - Nov 2017

Senior Engineer - Clinical Applications

1) Responsible for demonstration of various medical equipment for pre and post-sales assist. 2) Installation of the medical equipment in the hospital for after-sales service. 3) Training doctors/hospital staff/interns on the Olympus product line. 4) Coordinating with Olympus R&D and Service departments, for providing feedback on user issues. 5) Equipment dealt with are as follows: a) Olympus Imaging System (HD, 3D for Laparoscopic and Urology Surgeries). b) Olympus Energy System (Ultrasonic and RF Energy for Electrosurgical purposes). c) Dornier Medtech Extra-Corporeal Schokwave Lithotripter. d) Lisa Laser Systems. e) Electro Medical Systems (EMS) Lithotripters. f) BK Medical Ultrasound imaging systems.

South India Surgical Company Ltd | Mar 2014 - Mar 2015

Service Engineer

1) Responsible for installation, testing and demonstration of various medical equipments in hospitals. 2) Involved in tracking and analyzing equipment breakdown whenever required. 3) Providing preventive maintenance of equipments in various hospitals. 4) Marketing of medical equipments and instruments.

My Education

Take a look at my formal education

Master of Science - MS, Biomedical/Medical EngineeringFachhochschule Aachen | 2021
Bachelor of Technology (B.Tech.), Biomedical/Medical EngineeringJIS College of Engineering/ West Bengal University of Technology | 2014

About Me

Arjun Sarkar

Ph.D. researcher — Deep Learning on Biomedical Images at the Leibniz Institute-HKI, Germany. Enthusiastic about implementing AI in Healthcare.

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