Start Learning for Free

Join over 1,000,000 other Data Science learners and start one of our interactive tutorials today!

Topic r small

How to Make a Histogram with Basic R

March 10th, 2015 in R Programming

This is the first post in an R tutorial series that covers the basics of how you can create your own histograms in R. Three options will be explored: basic R commands, ggplot2 and ggvis. These posts are aimed at beginning and intermediate R users who need an accessible and easy-to-understand resource.

Making histogram with basic R commands will be the topic of this post; You will cover the following topics in this tutorial:

Want to learn more? Discover the R courses at DataCamp.

What Is A Histogram?

A histogram is a visual representation of the distribution of a dataset. As such, the shape of a histogram is its most obvious and informative characteristic: it allows you to easily see where a relatively large amount of the data is situated and where there is very little data to be found (Verzani 2004). In other words, you can see where the middle is in your data distribution, how close the data lie around this middle and where possible outliers are to be found. Exactly because of all this, histograms are a great way to get to know your data!

But what does that specific shape of a histogram exactly look like?

In short, the histogram consists of an x-axis, an y-axis and various bars of different heights. The y-axis shows how frequently the values on the x-axis occur in the data, while the bars group ranges of values or continuous categories on the x-axis. The latter explains why histograms don’t have gaps between the bars.

Note that the bars of histograms are often called “bins” ; This tutorial will also use that name.

How to Make a Histogram with Basic R

1. Show Me The Data

Since histograms require some data to be plotted in the first place, you do well importing a dataset or using one that is built into R.

This tutorial makes use of two datasets: the built-in R dataset AirPassengers and a dataset named chol, stored into a .txt file and available for download.

Before you can start using chol in your histograms, you can best read in the text file with the help of the read.table() function:

chol <- read.table(url("http://assets.datacamp.com/blog_assets/chol.txt"), header = TRUE)

2. Familiarize Yourself With The Hist() Function

You can simply make a histogram by using the hist() function, which computes a histogram of the given data values. You put the name of your dataset in between the parentheses of this function, like this:

eyJsYW5ndWFnZSI6InIiLCJzYW1wbGUiOiJoaXN0KEFpclBhc3NlbmdlcnMpIn0=

Which results in the following histogram:

However, if you want to select only a certain column of a data frame, chol for example, to make a histogram, you will have to use the hist() function with the dataset name in combination with the $ sign, followed by the column name:

eyJsYW5ndWFnZSI6InIiLCJwcmVfZXhlcmNpc2VfY29kZSI6ImNob2wgPC0gcmVhZC50YWJsZSh1cmwoXCJodHRwOi8vYXNzZXRzLmRhdGFjYW1wLmNvbS9ibG9nX2Fzc2V0cy9jaG9sLnR4dFwiKSwgaGVhZGVyID0gVFJVRSkiLCJzYW1wbGUiOiJoaXN0KGNob2wkQUdFKSAifQ==

Note that the chol data has already been loaded in for you!

In this piece of code, you compute a histogram of the data values in the column AGE of the dataframe named chol. When you execute this line of code, you’ll get the following histogram:

3. Take The hist() Function Up A Notch

The histograms of the previous section look a bit dull, don’t they?

The default visualizations usually do not contribute much to the understanding of your histograms. You therefore need to take one more step to reach a better and easier understanding of your histograms. Luckily, this is not too hard: R allows for several easy and fast ways to optimize the visualization of diagrams, while still using the hist() function.

In order to adapt your histogram, you simply need to add more arguments to the hist() function, just like this:

eyJsYW5ndWFnZSI6InIiLCJzYW1wbGUiOiJoaXN0KEFpclBhc3NlbmdlcnMsIFxuICAgICBtYWluPVwiSGlzdG9ncmFtIGZvciBBaXIgUGFzc2VuZ2Vyc1wiLCBcbiAgICAgeGxhYj1cIlBhc3NlbmdlcnNcIiwgXG4gICAgIGJvcmRlcj1cImJsdWVcIiwgXG4gICAgIGNvbD1cImdyZWVuXCIsXG4gICAgIHhsaW09YygxMDAsNzAwKSxcbiAgICAgbGFzPTEsIFxuICAgICBicmVha3M9NSkifQ==

This code computes a histogram of the data values from the dataset AirPassengers, gives it “Histogram for Air Passengers” as title, labels the x-axis as “Passengers”, gives a blue border and a green color to the bins, while limiting the x-axis from 100 to 700, rotating the values printed on the y-axis by 1 and changing the bin-width to 5.

Do you feel slightly overwhelmed by this large string of code? No worries!

The following sections will break down the above code chunk into smaller pieces to see what each argument, such as main, col, …, does.

Names/colors

You can change the title of the histogram by adding main as an argument to hist() function. In this case, you make a histogram of the AirPassengers data set with the title “Histogram for Air Passengers”:

eyJsYW5ndWFnZSI6InIiLCJzYW1wbGUiOiJoaXN0KEFpclBhc3NlbmdlcnMsIG1haW49XCJIaXN0b2dyYW0gZm9yIEFpciBQYXNzZW5nZXJzXCIpIn0=

If you want to adjust the label of the x-axis, add xlab. Similarly, you can also use ylab to label the y-axis:

eyJsYW5ndWFnZSI6InIiLCJzYW1wbGUiOiJoaXN0KEFpclBhc3NlbmdlcnMsIHhsYWI9XCJQYXNzZW5nZXJzXCIsIHlsYWI9XCJGcmVxdWVuY3kgb2YgUGFzc2VuZ2Vyc1wiKSJ9

In the DataCamp Light chunk above, you have made a histogram of the AirPassengers data set with changed labels on the x-and y-axes.

If you want to change the colors of the default histogram, you simply add the arguments border or col. You can adjust, as the names itself kind of give away, the borders or the colors of your histogram. In the following code chunk, your histogram will have blue-bordered bins with green filling:

eyJsYW5ndWFnZSI6InIiLCJzYW1wbGUiOiJoaXN0KEFpclBhc3NlbmdlcnMsIGJvcmRlcj1cImJsdWVcIiwgY29sPVwiZ3JlZW5cIikifQ==

Tip: do not forget to put the colors and names in between "".

X and Y Axes

Change the range of the x and y values on the axes by adding xlim and ylim as arguments to the hist() function:

eyJsYW5ndWFnZSI6InIiLCJzYW1wbGUiOiJoaXN0KEFpclBhc3NlbmdlcnMsIHhsaW09YygxMDAsNzAwKSwgeWxpbT1jKDAsMzApKSJ9

In the code chunk above, your histogram has an x-axis that is limited to values 100 to 700 and the y-axis is limited to values 0 to 30.

Note that the c() function is used to delimit the values on the axes when you are using xlim and ylim. It takes two values: the first one is the begin value, the second is the end value.

You can rotate the labels on the y axis by adding las = 1 as an argument. las can take the following values: 0, 1, 2 or 3.

According to whichever option you choose, the placement of the label will differ: if you choose 0, the label will always be parallel to the axis (which is the default); If you choose 1, the label will be put horizontally. Pick 2 if you want it to be perpendicular to the axis and 3 if you want it to be placed vertically.

eyJsYW5ndWFnZSI6InIiLCJzYW1wbGUiOiJoaXN0KEFpclBhc3NlbmdlcnMsIGxhcz0xKSAifQ==

In this case, your histogram has the y-values projected horizontally, because you pass value 1 to the las argument. Try changing the value that you pass to the las argument and see the effect!

Bins

You can change the bin width by adding breaks as an argument, together with the number of breakpoints that you want to have:

eyJsYW5ndWFnZSI6InIiLCJzYW1wbGUiOiJoaXN0KEFpclBhc3NlbmdlcnMsIGJyZWFrcz01KSAifQ==

The histogram that is the result of the line of code in the DataCamp Light chunk above has 5 breakpoints.

If you want to have more control over the breakpoints between bins, you can enrich the breaks argument by giving it a vector of breakpoints. You can do this by using the c() function:

eyJsYW5ndWFnZSI6InIiLCJzYW1wbGUiOiJoaXN0KEFpclBhc3NlbmdlcnMsIGJyZWFrcz1jKDEwMCwgMzAwLCA1MDAsIDcwMCkpICJ9

In other words, the histogram that is the result of the code above has bins such that they run from 100 to 300, 300 to 500 and 500 to 700.

However, the c() function can make your code very messy sometimes. That is why you can instead add seq(x, y, z). The values of x, y and z are determined by yourself and represent, in order of appearance, the begin number of the x-axis, the end number of the x-axis and the interval in which these numbers appear.

Note that you can also combine the two functions:

eyJsYW5ndWFnZSI6InIiLCJzYW1wbGUiOiJoaXN0KEFpclBhc3NlbmdlcnMsIGJyZWFrcz1jKDEwMCwgc2VxKDIwMCw3MDAsIDE1MCkpKSJ9

This histogram starts at 100 on the x-axis and at values 200 to 700, the bins are 150 wide. Take a look at the result of this piece of code by looking at the following image or by executing the DataCamp Light chunk!

Tip: study the changes in the y-axis thoroughly when you experiment with the numbers used in the seq argument!

Note that the different width of the bars or bins might confuse people and the most interesting parts of your data may find themselves to be not highlighted or even hidden when you apply this technique to your original histogram. So, just experiment with this and see what suits your purposes best!

Extra: Probability Density

The hist() function shows you by default the frequency of a certain bin on the y-axis. However, if you want to see how likely it is that an interval of values of the x-axis occurs, you will need a probability density rather than frequency. You thus want to ask for a histogram of proportions. You can change this by setting the freq argument to false or set the prob argument to TRUE:

eyJsYW5ndWFnZSI6InIiLCJzYW1wbGUiOiJoaXN0KEFpclBhc3NlbmdlcnMsIFxuICAgICBtYWluPVwiSGlzdG9ncmFtIGZvciBBaXIgUGFzc2VuZ2Vyc1wiLCBcbiAgICAgeGxhYj1cIlBhc3NlbmdlcnNcIiwgXG4gICAgIGJvcmRlcj1cImJsdWVcIiwgXG4gICAgIGNvbD1cImdyZWVuXCIsIFxuICAgICB4bGltPWMoMTAwLDcwMCksIFxuICAgICBsYXM9MSwgXG4gICAgIGJyZWFrcz01LCBcbiAgICAgcHJvYiA9IFRSVUUpIn0=

After you’ve called the hist() function to create the above probability density plot, you can subsequently add a density curve to your dataset by using the lines() function:

eyJsYW5ndWFnZSI6InIiLCJzYW1wbGUiOiJoaXN0KEFpclBhc3NlbmdlcnMsIFxuICAgICBtYWluPVwiSGlzdG9ncmFtIGZvciBBaXIgUGFzc2VuZ2Vyc1wiLCBcbiAgICAgeGxhYj1cIlBhc3NlbmdlcnNcIiwgXG4gICAgIGJvcmRlcj1cImJsdWVcIiwgXG4gICAgIGNvbD1cImdyZWVuXCIsIFxuICAgICB4bGltPWMoMTAwLDcwMCksIFxuICAgICBsYXM9MSwgXG4gICAgIGJyZWFrcz01LCBcbiAgICAgcHJvYiA9IFRSVUUpXG5cbmxpbmVzKGRlbnNpdHkoQWlyUGFzc2VuZ2VycykpIn0=

Note that this function requires you to set the prob argument of the histogram to TRUE first!

Want To Go Further?

For an exhaustive list of all the arguments that you can add to the hist() function, have a look at the RDocumentation article on the hist() function.

This is the first of three posts on creating histograms with R. The next post covers the creation of histograms using ggplot2.

Did you spot a mistake? Leave a comment below to let us know!

Comments

No comments yet. Be the first to respond!