Skip to main content

Course

Dealing With Missing Data in R

BasicSkill Level

4.7+

Updated 11/2025

Make it easy to visualize, explore, and impute missing data with naniar, a tidyverse friendly approach to missing data.

Start Course for Free

RData Preparation4 hr14 videos52 Exercises4,350 XP17,050Statement of Accomplishment

Create Your Free Account

or

By continuing, you accept our Terms of Use, our Privacy Policy and that your data is stored in the USA.

Loved by learners at thousands of companies

Training 2 or more people?

Try DataCamp for Business

Course Description

Missing data is part of any real-world data analysis. It can crop up in unexpected places, making analyses challenging to understand. In this course, you will learn how to use tidyverse tools and the naniar R package to visualize missing values. You'll tidy missing values so they can be used in analysis and explore missing values to find bias in the data. Lastly, you'll reveal other underlying patterns of missingness. You will also learn how to "fill in the blanks" of missing values with imputation models, and how to visualize, assess, and make decisions based on these imputed datasets.

Prerequisites

Introduction to R Introduction to the Tidyverse

1

Why care about missing data?

Chapter 1 introduces you to missing data, explaining what missing values are, their behavior in R, how to detect them, and how to count them. We then introduce missing data summaries and how to summarise missingness across cases, variables, and how to explore across groups within the data. Finally, we discuss missing data visualizations, how to produce overview visualizations for the entire dataset and over variables, cases, and other summaries, and how to explore these across groups.

Introduction to missing data

Using and finding missing values

How many missing values are there?

Working with missing values

Why care about missing values?

Summarizing missingness

Tabulating Missingness

Other summaries of missingness

How do we visualize missing values?

Your first missing data visualizations

Visualizing missing cases and variables

Visualizing missingness patterns

2

Wrangling and tidying up missing values

In chapter two, you will learn how to uncover hidden missing values like "missing" or "N/A" and replace them with NA. You will learn how to efficiently handle implicit missing values - those values implied to be missing, but not explicitly listed. We also cover how to explore missing data dependence, discussing Missing Completely at Random (MCAR), Missing At Random (MAR), Missing Not At Random (MNAR), and what they mean for your data analysis.

Searching for and replacing missing values

Using miss_scan_count

Using replace_with_na

Using replace_with_na scoped variants

Filling down missing values

Fix implicit missings using complete()

Fix explicit missings using fill()

Using complete() and fill() together

Missing Data dependence

Differences between MCAR and MAR

Exploring missingness dependence

Further exploring missingness dependence

3

Testing missing relationships

In this chapter, you will learn about workflows for working with missing data. We introduce special data structures, the shadow matrix, and nabular data, and demonstrate how to use them in workflows for exploring missing data so that you can link summaries of missingness back to values in the data. You will learn how to use ggplot to explore and visualize how values changes as other variables go missing. Finally, you learn how to visualize missingness across two variables, and how and why to visualize missings in a scatterplot.

Tools to explore missing data dependence

Creating shadow matrix data

Performing grouped summaries of missingness

Further exploring more combinations of missingness

Visualizing missingness across one variable

Nabular data and filling by missingness

Nabular data and summarising by missingness

Explore variation by missingness: box plots

Visualizing missingness across two variables

Exploring missing data with scatter plots

Using facets to explore missingness

Faceting to explore missingness (multiple plots)

4

Connecting the dots (Imputation)

In this chapter, you will learn about filling in the missing values in your data, which is called imputation. You will learn how to impute and track missing values, and what the good and bad features of imputations are so that you can explore, visualise, and evaluate the imputed data against the original values. You will learn how to use, evaluate, and compare different imputation models, and explore how different imputation models affect the inferences you can draw from the models.

Filling in the blanks

Impute data below range with nabular data

Visualize imputed values in a scatter plot

Create histogram of imputed data

What makes a good imputation

Evaluating bad imputations

Evaluating imputations: The scale

Evaluating imputations: Across many variables

Performing imputations

Using simputation to impute data

Evaluating and comparing imputations

Evaluating imputations (many models & variables)

Evaluating imputations and models

Combining and comparing many imputation models

Evaluating the different parameters in the model

Final Lesson

Dealing With Missing Data in R

Course
Complete

Earn Statement of Accomplishment

Add this credential to your LinkedIn profile, resume, or CV
Share it on social media and in your performance reviewEnroll Now

Don’t just take our word for it

*4.7

from 130 reviews

78%

19%

2%

0%

0%

Sort by

Mohammed

1 hour ago

Faruk

21 hours ago

Naehma

yesterday

Was advanced for me!!

Takuya

2 days ago

Caleb

3 days ago

Jiaqi

last week

Mohammed

Faruk

Caleb

FAQs

Which R packages does this course focus on for handling missing data?

The course centers on the naniar package along with tidyverse tools. You use naniar to visualize, summarize, and explore patterns of missingness in your datasets.

Does this course cover data imputation techniques?

Yes. The final chapter teaches you how to fill in missing values using imputation models, then evaluate and compare the quality of different imputation approaches.

What are MCAR, MAR, and MNAR, and does this course explain them?

These are categories describing why data is missing. The course explains each type, Missing Completely at Random, Missing at Random, and Missing Not at Random, and their implications for analysis.

Is this course suitable if I only know basic R?

Yes. It is listed as beginner level and requires only Introduction to R and Introduction to the Tidyverse as prerequisites.

What visualization methods are taught for spotting missing data patterns?

You learn to create overview visualizations for entire datasets plus detailed plots across variables, cases, and grouped summaries using ggplot and naniar functions.

Join over 19 million learners and start Dealing With Missing Data in R today!

Create Your Free Account

or

By continuing, you accept our Terms of Use, our Privacy Policy and that your data is stored in the USA.

Grow your data skills with DataCamp for Mobile

Make progress on the go with our mobile courses and daily 5-minute coding challenges.